1. A Novel Role for an ECF sigma factor in Fatty Acid Biosynthesis and Membrane Fluidity in Pseudomonas aeruginosa. Boechat, A.L.; Kaihami, G.; Politi, M.J.; Lépine, F.; Baldini, R.L. Plos One. aceito em 19/11/2013.
2. A Redox 2-Cys Mechanism Regulates the Catalytic Activity of Divergent Cyclophilins. Campos, B.M., Sforça, M.L., Ambrosio, A.L., Domingues, M.N., Souza, T.A., Barbosa, J.A., Leme, A.F., Perez, C.A., Whittaker, S.B., Murakami, M.T., Zeri, A.C., Benedetti, C.E. Plant Physiol. May 24. [Epub ahead of print] (2013).
3. Acidulated Phosphate Fluoride Application Changes the Protein Composition of Human Acquired Enamel Pellicle. Masson N., Domingues RR, Cury .JA., Paes Leme A.F. Caries Research, 47, 251-258 (2013).
4. Active Glutaminase C self-assembles into a supra-tetrameric structure which can be disrupted by the allosteric inhibitor BPTES. Amanda PS Ferreira, Alexandre Cassago, Kaliandra A Gonçalves, Marília M Dias,  Douglas Adamoski, Carolline FR Ascenção, Rodrigo V Honorato, Juliana F de Oliveira, Igor M Ferreira, Camila Fornezari, Jefferson Bettini, Paulo SL Oliveira, Adriana FP Leme, Rodrigo V Portugal, Andre LB Ambrosio and Sandra MG Dias. J Biol Chem. 2013 Sep 27;288(39):28009-20
5. ADAM17 mediates OSCC development in an orthotopic murine model” Simabuco F.M., Kawahara R., Yokoo S., Granato D.C., Miguel L., Agostini M., Aragão A.Z.B, Domingues R.R., Flores I.L., Graner E., Paes Leme AF.
6. Aspergillus niger beta-glucosidase has a cellulase-like tadpole molecular shape: insights into GH3 beta-glucosidases structure and function. LIMA, M. A. ; OLIVEIRA-NETO, M. ; KADOWAKI, M. A. S. ; ROSSETO, F. R. ; PRATES, E. T. ; SQUINA, F. M. ; LEME, A. F. P. ; SKAF, M. S. ; POLIKARPOV, I. The Journal of Biological Chemistry (Print) , v. X, p. X, 2013.
7. Biochemical characterization of an endoxylanase from Pseudozyma brasiliensis sp. nov. strain GHG001 isolated from the intestinal tract of Chrysomelidae larvae associated to sugarcane roots. BORGES, THUANNY A. ; SOUZA, ALINE TIEPPO DE ; Squina, Fabio M. ; RIAÑO-PACHÓN, DIEGO MAURICIO ; SANTOS, RENATO AUGUSTO CORRÊA DOS ; MACHADO, EDNILDO ; OLIVEIRA, JULIANA VELASCO DE CASTRO ; Damásio, André R.L. ; GOLDMAN, GUSTAVO H. Process Biochemistry (1991) , v. X, p. X, 2013.
8. c-di-GMP modulates fitness of Pseudomonas aeruginosa in the presence of imipenem. Nicastro, GG; Kaihami, GH; Meireles, D.; Oliveira, T; Groleau, M; Déziel, E; Baldini, RL.Environmental Microbiology. Submetido em 18/11/2013.
9. Citrus MAF1, a repressor of RNA polymerase III, binds the Xanthomonas citri canker elicitor PthA4 and suppresses citrus canker development.
Soprano AS, Abe VY, Smetana JH, Benedetti CE.
Plant Physiol. 2013 Sep;163(1):232-42.
10. DMBA- induced myelotoxicity differs in mice selected for high or low acute inflammatory response with different aryl hydrocarbon receptor alleles. Iana Suly Santos Katz, Layra Lucy Alburqueque, Alessandra Paes Suppa, Débora Mathias de Siqueira, Cristiano Rossato, Graziela Batista da Silva, José Ricardo Jensen, Nancy Starobinas, Wafa Hanna Koury Cabrera, Marcelo De Franco, Primavera Borelli, Olga Martinez Ibañez and Orlando Garcia Ribeiro. International Journal of Toxicology.
11. Electrophoresis and spectrometric analyses of adaptation-related proteins in thermally stressed Chromobacterium violaceum.  I.B. Cordeiro, D.P. Castro, P.P.O. Nogueira, P.C.S. Angelo, P.A. Nogueira, J.F.C. Gonçalves, A.M.R.F. Pereira, J.S. Garcia, G.H.M.F. Souza, M.A.Z. Arruda, M.N. Eberlin, S. Astolfi-Filho, E.V. Andrade and J.L. López-Lozano. Genetics and Molecular Research 12 (4): 5057-5071 (2013)
12. Functional diversification of cerato-platanins in Moniliophthora perniciosa as seen by differential expression and protein function specialization.  Barsottini, MRO, de Oliveira, JF, Meira, DA, Teixeira, PJPL, do Prado, PFV, Tiezzi, HP, Sforça, ML, Cassago, A, Portugal, RV, de Oliveira, PSL, Zeri, ACM, Dias, SMG, Pereira, GAG and Ambrosio, ALB. Mol Plant Microbe Interact. 2013 26(11):1281-93
13. Global analyses of Ceratocystis cacaofunesta mitochondria: from genome to proteome. Ambrosio A.B., do Nascimento L.C., Oliveira B.V., Teixeira P.J., Tiburcio R.A., Toledo Thomazella D.P., Paes Leme A.F., Carazzolle M.F., Vidal R.O., Mieczkowski P., Meinhardt L.W., Pereira G.A., Cabrera O.G. BMC Genomics, 14:91 (2013).
14. Hippocampal Proteomic Profile in Temporal Lobe Epilepsy. 2012. Persike DS, Lima ML, Amorim RP, Cavalheiro EA, Yacubian EMT, Centeno RS, Carrete Jr H, Schenkman S, Canzian M, Fernandes MJS. J Epilepsy Clin Neurophysiol 2012;18(2):53-56.
15. Metaproteome analysis of endodontic infections in association with different clinical conditions. Provenzano J.C., Siqueira J.F. Jr, Rôças I.N., Domingues R.R., Paes Leme A.F., Silva M.R. PLoS One, 8(10):e76108 (2013). 
16. Mycobacterium tuberculosis Dihydrofolate Reductase Reveals Two Conformational States and a Possible Low Affinity Mechanism to Antifolate Drugs. Dias M.V., Tyrakis P., Domingues R.R., Paes Leme A.F., Blundell TL. Structure (2013), aceito.
17. Phosphoproteome analysis of tumorigenic epithelial cells revealed differing phosphosite profiles compared to non-tumorigenic cell line. Flavia V. Winck, Marília Belloni, Bianca A. Pauletti, Jackeline de Lima Zanella,  Romênia R. Domingues, Nicholas E. Sherman, Adriana F. Paes Leme. Journal of Proteomics. 
18. Phosphoproteome analysis reveals differences in phosphosite profiles between tumorigenic and non-tumorigenic epithelial cells.” Winck F.V., Belloni M., Pauletti B.A., Zanella J.L., Domingues R.R.,  Sherman N.E.,  Paes Leme A.F.
19. P-I snake venom metalloproteinase is able to activate the complement system by direct cleavage of central components of the cascade. Pidde-Queiroz G., Magnoli F.C., Portaro F.C., Serrano S.M., Lopes A.S., Paes Leme A.F., van den Berg C.W., Tambourgi D.V.PLoS Negl Trop Dis. 7, e2519 (2013).
20. Proteome analysis of the plasma protein layer adsorbed to a rough titanium surface. Dodo C.G., Senna P.M., Custodio W., Paes Leme A.F., Del Bel Cury A.A.
Biofouling, 29, 549-557 (2013).
21. Proteomic Analysis of Yeast Mutant RNA Exosome Complexes. Lourenço R.F., Paes Leme A.F., Oliveira C.C. J Proteome Res (2013), aceito. 
22. Proteomic profiling of the infective trophozoite stage of Acanthamoeba polyphaga. Karin S. Caumo, Karina M. Monteiro, Thiely R. Ott, Glauber Wagner, Vinicius Maschio, Henrique B. Ferreira, Marilise B. Rott.
Acta Tropica
23. Proteomic, Cellular, and Network Analyses Reveal New DUSP3 Interactions with Nucleolar Proteins in HeLa Cells. Panico K, Forti FL. J Proteome Res. 2013 Nov 25. [Epub ahead of print]
24. Protrusion‐guided extracellular vesicles mediate CD30 trans‐signaling in the microenvironment of Hodgkin lymphoma. Hansen H.P., Engels H.M., Dams M., Paes Leme A.F., Pauletti B.A., Simhadri V.L., Dürkop H., Reiners K.S., Barnert S., Engert A., Schubert R., Quondamatteo F., Hallek M., von Strandmann E.P. Journal Pathol (2013), aceito.
25. Purification, Characterization, Local and Systemic Effects of a New Weakly Hemorrhagic Snake Venom Metalloproteinase (BtaHF) from the Bothriopsis taeniata Snake Venom. Torres-Huaco Frank Denis, Leiva, Laura. Cristina, Teibler, Pamela, Maruñak, Silvana. L, Acosta de Pérez, Ofelia. C, Martins-de-Souza, Daniel, Ponce-Soto, Luis Alberto1 and Marangoni, Sergio. Protein and Peptide Letters. 
26. Purification, partial characterization, and covalent immobilization stabilization of an extracellular α-amylase from Aspergillus niveus. SILVA, TONY MARCIO ; DAMÁSIO, ANDRÉ RICARDO DE LIMA ; MALLER, ALEXANDRE ; MICHELIN, MICHELE ; Squina, Fabio M. ; JORGE, JOÃO ATÍLIO ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Folia Microbiologica (Prague) , v. X, p. X, 2013.
27. Rapid purification, pro-coagulant and platelet aggregating activities of Rhombeobin (LMR-47), a Thrombin-like/gyroxin enzyme from Lachesis muta rhombeata snake venom. Frank Denis Torres-Huaco, Cláudio C. Werneck, Cristina Pontes Vicente, Talita Vassequi-Silva, Ana Cláudia Coelho Nery-Diez, Rodrigo C. G. de Souza, Camila, B. Mendes, Edson Antunes, Sérgio Marangoni and Daniela C. S. Damico. BioMed Research International.
28. Renal proteome in mice with different susceptibilities to fluorosis. 2013.Carvalho JG, Leite Ade L, Peres-Buzalaf C, Salvato F, Labate CA, Everett ET, Whitford.  GM, Buzalaf MA. PLoS One, 8(1):e53261. doi: 10.1371
29. Sodium citrate and potassium phosphate as alternative adsorption buffers in hydrophobic and aromatic thiophilic chromatographic purification of plasmid DNA from neutralized lysate. BONTURI, NEMAILLA ; RADKE, VANESSA SORAIA CORTEZ OLIVEIRA ; BUENO, SÔNIA MARIA ALVES ; FREITAS, SINDÉLIA ; Azzoni, Adriano Rodrigues ; MIRANDA, EVERSON ALVES. Journal of Chromatography. B, v. 919-92, pp. 67-74, 2013
30. SpliceProt: a protein sequence repository of predicted human splice variants. Tavares R., Scherer N.D., Pauletti B.A., Araújo E., Folador E.L., Espindola G., Ferreira C.G., Paes Leme A.F., de Oliveira P.S., Passetti F. Proteomics (2013), aceito. 
31. Structural analysis of intermolecular interactions in the kinesin adaptor complex FEZ1/SCOCO (Fasciculation and Elongation protein Zeta 1/ Short Coiled-Coil protein). Alborghetti, M.R., Furlan, A.S., Silva, J.C., Sforça, M.L., Honorato, R.V.,  Granato, D.C.,  Migueleti, D.L., Neves, J.L. Oliveira, P.S.L., Leme, A.F.P., Zeri, A.C., Torriani, I.C.L., Kobarg, J. (2013) Plos1, revisão submetida.
32. Suspension cell culture as a tool for the characterization of class III peroxidases in sugarcane. Cesarino I., Araújo P., Paes Leme A.F., Creste S., Mazzafera P. Plant Physiol Bioche, 62, 1-10 (2013).
33. The anti-inflammatory action of Bothrops jararaca snake antithrombin on acute inflammation induced by carrageenan in mice. 2013. Morais-Zani, K., Nunes, F. P. B., Silva, J. B., Ferreira, M. J., Grego, K. F., Lopes-Ferreira, M., Tanaka, A.S., Tanaka-Azevedo, A. M.. Inflamm. Res., DOI 10.1007/s00011-013-0628-x.
34. The characterization of a thermostable and cambialistic superoxide dismutase from Thermus filiformis. Mandelli F., Franco Cairo J.P., Citadini A.P., Büchli F., Alvarez T.M., Oliveira R.J., Leite V.B., Paes Leme A.F., Mercadante A.Z., Squina FM. Lett Appl Microbiol, 57, 40-66 (2013).
35. The Pho regulon genes from Xanthomonas citri – a proteomic view. Pegos, Vanessa Rodrigues; Faria, Jéssica; Pauletti, Bianca Alves; Paes-Leme, Adriana; Balan, Andrea. Proteomics Journal.
36. Understanding the cellulolytic system of Trichoderma harzianum P49P11 and enhancing saccharification of pretreated sugarcane bagasse by supplementation with pectinase and α-l-arabinofuranosidase. DELABONA, PRISCILA DA SILVA ; Cota, Júnio ; Hoffmam, Zaira Bruna ; PAIXÃO, DOUGLAS ANTONIO ALVAREDO ; FARINAS, CRISTIANE SANCHEZ ; CAIRO, JOÃO PAULO LOURENÇO FRANCO ; LIMA, DEISE JULIANA ; SQUINA, FÁBIO MARCIO ; Ruller, Roberto ; PRADELLA, JOSÉ GERALDO DA CRUZ . Bioresource Technology, v. 131, p. 500-507, 2013.
37. Urinary proteomic study in preeclamptic patients. Joyce P TAKATSUKA, Bianca A PAULETTI, Adriana F PAES LEME, Marina C PASCHOINI, Roseli A S GOMES. American Journal of Obstetrics and Gynecology.